.. _cc_mapping:

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cc-mapping: Cell Cycle Mapping
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**cc-mapping** provides Gaussian Mixture Model-based thresholding tools for cell cycle analysis.

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                    <h5 class="card-title">Install</h5>
                    <p class="card-text">Learn how to install cc-mapping and get started.</p>

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    :ref:`Install cc-mapping <installation>`

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    :ref:`API Reference <api_ref>`

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                    <p class="card-text">See practical examples and tutorials.</p>

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    :ref:`Examples <examples>`

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Features
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* **Gaussian Mixture Model Thresholding**: Automatically identify cell cycle phases using GMM-based methods
* **Sequential Thresholding**: Apply thresholding sequentially across multiple features
* **Visualization Tools**: Built-in plotting functions for quality control and results
* **AnnData Integration**: Works seamlessly with scanpy/AnnData workflows


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   installation

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   api/index

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   tutorials/index